Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015795627.1_cds_XP_016445136.1_3934
CDS Infomation

[gene=LOC107770346] [db_xref=GeneID:107770346] [protein=protein MICRORCHIDIA 2-like] [protein_id=XP_016445136.1] [location=complement(join(43652..43759,43901..43943,45504..45592,45793..46027,51675..51786,51861..51912,52375..52464,52737..52886,52976..53083,58427..58525,60359..60487,60608..60686,62513..62588,62803..62892,62982..63060,65429..65463,65700..65774,65868..66108))] [gbkey=CDS]
Sequence

ATGTCGCCTGAGAAGCCCCCAATCGATGTCGTCGAACTCGACAGTAGCGACGACGAAGGC
GCCGGCGTCATCGGAAAGAGAAAACCAGACTTACCTCACGGAGGAAATTCTCTGAGTAAA
TCACCGGTAATAGAAAATCCCAACGCGATTGTTCCATCCAATTACAGGCCATTGGAGTCT
CGAAGTTTCTGGAAAGCTGGCAATTTTGAAGTTGGTCGTATCAAATCAACTGCTATACAT
GGTGAATTGGAACATGCGCGTGTTCATCCCAAATTTCTGCATTCCAATGCTACTTCTCAT
AAATGGGCGTTTGGAGCAATAGCCGAGCTTTTGGATAATGCTGTTGACGAGATAAGCAGT
GGGGCAACTTTCGTGAAAGTTGACAGAATTTATAACCCAAGGGACAACTCTCCTGCATTG
CTCTTCCAGGACGATGGGGGTGGTATGGATCCAGAACGTCTTCGCAAGTGCATGAGCCTG
GGTTATTCTTCAAAAACATCAAACTCAACAATTGGACAATATGGTAATGGATTTAAGACG
AGTACCATGAGGTTAGGCGCTGATGTGATTGTTTTCAGCCGTTCATCGCAGTCAGGCCGA
GCAACTCAAAGTATTGGTCTTCTGTCCTATACATTTCTTCGGAGAACAGGGCAAGATGAT
GTGATTGTTCCAATGATCGATTTTGATATCTCCGACCATTGGGCTGAACCAATACTATGT
GGCTCTCAAGATGATTGGTCAACTAACTTGAAAACAATCCTTGAGTGGTCCCCTTTTGCA
ACAAAGATGGATCTTATGCAACAGTTTGAGGATATAAAATCACATGGAACTAAGATTATA
GTCTACAACCTATGGCTGAATGATGAAGGAATTTATGAGCTGAACTTTGATGACGATGAT
GAGGATATAATGTTGAGAGATGAAGCTAATTGTGGAAATACATCAAAAACAAACAAGAGA
GTGCTTGAACAGCAATCCCATATTTCCTATCGCTTACGCTACTCACTAAGAGCATACACA
TCCATATTATACCTCAAAAAATTTACAAATTTCAGTATCATACTAAGAGGGAAGCCCATT
GAGCAGTTTAATATTCTTGAGGAGTTAAAGCACTCAAAAGTAATCACCTACAAGCCACAG
CTTGCTGGGACATCAAAGGAGATCTTGGTTGAAACAACTTTAGGCTTCGTCAAGGATGCT
CCATCACCAGTTTGTGGATTCAACATTTACCACAAAAATCGCCTCATCAGGCCATTCTGG
AAAGTTACTGCAGATGGTTCTTCCAAAGGAAATGGTGTTGTTGGTGTTCTGGAAGCAAAT
TTCATAGAACCTGCACATGACAAGCAAGATTTTGAAAGATCATCTCTGTTTTTCAAGCTG
GAGACTAGGCTAAAGCAAATGGTGATGGACTACTGGAAAGGTCATTGTCACCTGATAGGA
CTGAAGCCTCTTGAACCACATTTGCAAAATCTTCAGAGAGAGCAAGCGGCTAATGCTCAA
ATACAGTCGCCAACTACTGACTGTCAGCCAGTTACCGGCCTTGCAGCTCATCCCAGGCCA
GATTTCTGTTCTGTGCAGAGTGACAAAGTGGGAAGAACCAATTCCAGTAGGGAATTGCCA
GCTGTACAACCTATCACAGGGAATGCAACTGGATCTGTTCAAAAAGATACACAAATAGCC
AGTTCAAGTTGCATGTCAATTGATCAGATTTGTGAAGAGAATATCCAACTCTTTAGGAGG
TGTGAGTCATACATCCAAAGGGAAACCGAGTTGAAACGTACAATAGAGGAGCTTGAGAAA
GAGTTAGAGGACACTAAAAAGAAATCTGCCGATCTTTCTTCACGCCTGGAAAGTCAGAAA
AAGCTTAAACTTCTGAAACAATGTGGGTAG

Peptide Sequence

PEP ID

XP_016445136.1
PEP Infomation

PREDICTED: protein MICRORCHIDIA 2-like [Nicotiana tabacum]
Sequence

MSPEKPPIDVVELDSSDDEGAGVIGKRKPDLPHGGNSLSKSPVIENPNAIVPSNYRPLES
RSFWKAGNFEVGRIKSTAIHGELEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEISS
GATFVKVDRIYNPRDNSPALLFQDDGGGMDPERLRKCMSLGYSSKTSNSTIGQYGNGFKT
STMRLGADVIVFSRSSQSGRATQSIGLLSYTFLRRTGQDDVIVPMIDFDISDHWAEPILC
GSQDDWSTNLKTILEWSPFATKMDLMQQFEDIKSHGTKIIVYNLWLNDEGIYELNFDDDD
EDIMLRDEANCGNTSKTNKRVLEQQSHISYRLRYSLRAYTSILYLKKFTNFSIILRGKPI
EQFNILEELKHSKVITYKPQLAGTSKEILVETTLGFVKDAPSPVCGFNIYHKNRLIRPFW
KVTADGSSKGNGVVGVLEANFIEPAHDKQDFERSSLFFKLETRLKQMVMDYWKGHCHLIG
LKPLEPHLQNLQREQAANAQIQSPTTDCQPVTGLAAHPRPDFCSVQSDKVGRTNSSRELP
AVQPITGNATGSVQKDTQIASSSCMSIDQICEENIQLFRRCESYIQRETELKRTIEELEK
ELEDTKKKSADLSSRLESQKKLKLLKQCG

Transcript Sequence

Gene sequence data has not been registered.